bare.cc File Reference

#include "genealogy.h"
#include "generics.h"
#include "internal.h"

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Functions
SEXP	curtail (SEXP State, SEXP Time, SEXP Troot)
	curtail the given genealogy
SEXP	yaml (SEXP State)
	extract a YAML description
SEXP	gendat (SEXP State)
	data-frame format

Function Documentation

curtail()

SEXP curtail	(	SEXP	State,
		SEXP	Time,
		SEXP	Troot )

curtail the given genealogy

Definition at line 10 of file bare.cc.

                                                   {
    genealogy_t A = State;
    double t, t0;
    t = *REAL(AS_NUMERIC(Time));
    t0 = *REAL(AS_NUMERIC(Troot));
    if (ISNA(t)) t = A.time();
    if (ISNA(t0)) t0 = A.timezero();
    A.curtail(t,t0);
    SEXP out;
    PROTECT(out = serial(A));
    SET_ATTR(out,install("class"),mkString("gpgen"));
    UNPROTECT(1);
    return out;
  }

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gendat()

SEXP gendat

(

SEXP

State

)

data-frame format

Definition at line 32 of file bare.cc.

                           {
    genealogy_t A = State;
    A.prune();
    A.obscure();
    A.trace_lineages();
    return A.gendat();
  }

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yaml()

SEXP yaml

(

SEXP

State

)

extract a YAML description

Definition at line 26 of file bare.cc.

                         {
    genealogy_t A = State;
    return mkString(A.yaml().c_str());
  }

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