phylopomp
Phylodynamics for POMPs
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- a -
add() :
nodeseq_t
- b -
ball() :
pocket_t
ball_t() :
ball_t
birth() :
genealogy_t
,
master_t< POPN, NDEME >
bytesize() :
genealogy_t
,
inventory_t< NDEME >
,
master_t< POPN, NDEME >
,
node_t
,
nodeseq_t
,
pocket_t
,
popul_proc_t< STATE, PARAMETERS, NEVENT, NDEME >
- c -
check_genealogy_size() :
genealogy_t
child() :
ball_t
clean() :
genealogy_t
,
inventory_t< NDEME >
,
master_t< POPN, NDEME >
,
node_t
,
nodeseq_t
,
pocket_t
,
popul_proc_t< STATE, PARAMETERS, NEVENT, NDEME >
clear() :
inventory_t< NDEME >
color_name() :
ball_t
color_symbol() :
ball_t
colored() :
nodeseq_t
comb() :
nodeseq_t
compare() :
nodeseq_t
curtail() :
genealogy_t
- d -
dawn() :
nodeseq_t
dead_root() :
node_t
death() :
genealogy_t
,
master_t< POPN, NDEME >
deme() :
ball_t
,
node_t
describe() :
ball_t
,
genealogy_t
,
master_t< POPN, NDEME >
,
node_t
,
nodeseq_t
,
pocket_t
destroy_node() :
nodeseq_t
drop() :
nodeseq_t
dusk() :
nodeseq_t
- e -
empty() :
inventory_t< NDEME >
erase() :
inventory_t< NDEME >
event_rates() :
popul_proc_t< STATE, PARAMETERS, NEVENT, NDEME >
extant() :
genealogy_t
- g -
gendat() :
genealogy_t
genealogy_t() :
genealogy_t
graft() :
genealogy_t
,
master_t< POPN, NDEME >
green_ball() :
node_t
- h -
holder() :
ball_t
holds() :
pocket_t
holds_own() :
node_t
- i -
insert() :
inventory_t< NDEME >
inventory_t() :
inventory_t< NDEME >
is() :
ball_t
is_root() :
node_t
- j -
jump() :
master_t< POPN, NDEME >
,
popul_proc_t< STATE, PARAMETERS, NEVENT, NDEME >
- l -
last_ball() :
pocket_t
length() :
nodeseq_t
lineage() :
node_t
lineage_count() :
genealogy_t
,
master_t< POPN, NDEME >
lineage_incr() :
node_t
- m -
make_node() :
genealogy_t
master_t() :
master_t< POPN, NDEME >
migrate() :
genealogy_t
,
master_t< POPN, NDEME >
- n -
nchildren() :
node_t
ndeme() :
genealogy_t
newick() :
ball_t
,
genealogy_t
,
master_t< POPN, NDEME >
,
node_t
,
nodeseq_t
node_t() :
node_t
nsample() :
genealogy_t
ntime() :
nodeseq_t
- o -
obscure() :
genealogy_t
operator()() :
ball_order
operator+=() :
genealogy_t
,
nodeseq_t
operator=() :
ball_t
,
genealogy_t
,
inventory_t< NDEME >
,
master_t< POPN, NDEME >
,
node_t
,
popul_proc_t< STATE, PARAMETERS, NEVENT, NDEME >
operator[]() :
inventory_t< NDEME >
other() :
pocket_t
owner() :
ball_t
- p -
parent() :
node_t
parse() :
genealogy_t
play() :
master_t< POPN, NDEME >
,
popul_proc_t< STATE, PARAMETERS, NEVENT, NDEME >
popul_proc_t() :
popul_proc_t< STATE, PARAMETERS, NEVENT, NDEME >
position() :
nodeseq_t
prune() :
genealogy_t
- r -
random_ball() :
inventory_t< NDEME >
random_balls() :
inventory_t< NDEME >
repair_holder() :
pocket_t
repair_owners() :
nodeseq_t
,
pocket_t
rinit() :
master_t< POPN, NDEME >
,
popul_proc_t< STATE, PARAMETERS, NEVENT, NDEME >
- s -
sample() :
genealogy_t
,
master_t< POPN, NDEME >
sample_death() :
genealogy_t
,
master_t< POPN, NDEME >
scan_ball() :
genealogy_t
scan_color() :
genealogy_t
scan_label() :
genealogy_t
scan_node() :
genealogy_t
scan_tree() :
genealogy_t
size() :
inventory_t< NDEME >
sort() :
nodeseq_t
structure() :
ball_t
,
genealogy_t
,
master_t< POPN, NDEME >
,
node_t
,
nodeseq_t
,
pocket_t
swap() :
nodeseq_t
- t -
time() :
genealogy_t
,
master_t< POPN, NDEME >
,
popul_proc_t< STATE, PARAMETERS, NEVENT, NDEME >
timezero() :
genealogy_t
,
master_t< POPN, NDEME >
trace_lineage() :
nodeseq_t
trace_lineages() :
nodeseq_t
- u -
unique() :
genealogy_t
update_clocks() :
popul_proc_t< STATE, PARAMETERS, NEVENT, NDEME >
update_IVPs() :
popul_proc_t< STATE, PARAMETERS, NEVENT, NDEME >
update_params() :
popul_proc_t< STATE, PARAMETERS, NEVENT, NDEME >
- v -
valid() :
genealogy_t
,
popul_proc_t< STATE, PARAMETERS, NEVENT, NDEME >
- y -
yaml() :
ball_t
,
genealogy_t
,
master_t< POPN, NDEME >
,
node_t
,
nodeseq_t
,
pocket_t
,
popul_proc_t< STATE, PARAMETERS, NEVENT, NDEME >
- ~ -
~ball_t() :
ball_t
~genealogy_t() :
genealogy_t
~inventory_t() :
inventory_t< NDEME >
~master_t() :
master_t< POPN, NDEME >
~node_t() :
node_t
~nodeseq_t() :
nodeseq_t
~pocket_t() :
pocket_t
~popul_proc_t() :
popul_proc_t< STATE, PARAMETERS, NEVENT, NDEME >
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