phylopomp
Phylodynamics for POMPs
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Data Structures
Here are the data structures with brief descriptions:
 Cball_orderOrdering for balls in pockets
 Cball_tBalls function as pointers
 Cgenealogy_tEncodes a genealogy
 Cinventory_tRepresentation for the inventory process
 Clbdp_parameters_tLBDP process parameters
 Clbdp_state_tLBDP process state
 Cmaster_tEncodes the master process
 Cmoran_parameters_tMoran process parameters
 Cmoran_state_tMoran process state
 Cnode_tEncodes a genealogical node
 Cnodeseq_tA sequence of nodes
 Cpocket_tA pocket is a set of balls
 Cpopul_proc_tPopulation process class
 Cs2i2r2_parameters_tS2I2R2 process parameters
 Cs2i2r2_state_tS2I2R2 process state
 Cseir_parameters_tSEIR process parameters
 Cseir_state_tSEIR process state
 Csi2r_parameters_tSI2R process parameters
 Csi2r_state_tSI2R process state
 Csiir_parameters_tSIIR process parameters
 Csiir_state_tSIIR process state
 Csir_parameters_tSIR process parameters
 Csir_state_tSIR process state
 Ctwospecies_parameters_tTwoSpecies process parameters
 Ctwospecies_state_tTwoSpecies process state