init.c

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#include "init.h"
#include "decls.h"
#include "pomplink.h"
 
get_userdata_t *get_userdata;
get_userdata_double_t *get_userdata_double;
get_userdata_int_t *get_userdata_int;
 
SEXP parse_newick (SEXP, SEXP, SEXP);
SEXP getInfo (SEXP);
SEXP genealSum (SEXP);
SEXP curtail (SEXP, SEXP, SEXP);
SEXP yaml (SEXP);
SEXP gendat (SEXP, SEXP);
SEXP geneal (SEXP);
SEXP subsample (SEXP, SEXP);
SEXP genealScaleShift (SEXP, SEXP, SEXP);
SEXP cblv (SEXP);
SEXP parse_cblv (SEXP, SEXP, SEXP);
 
// for each model, there must be
// one DECLARATIONS line and one METHODS line.
 
DECLARATIONS(BDEI);
DECLARATIONS(BDSS);
DECLARATIONS(LBDP);
DECLARATIONS(MERS);
DECLARATIONS(Moran);
DECLARATIONS(S2I2R2);
DECLARATIONS(SEIR);
DECLARATIONS(SI2R);
DECLARATIONS(SIIR);
DECLARATIONS(SIR);
DECLARATIONS(Strains);
DECLARATIONS(TwoSpecies);
DECLARATIONS(TwoUndead);
 
static const R_CallMethodDef callMethods[] = {
  METHODS(BDEI),
  METHODS(BDSS),
  METHODS(LBDP),
  METHODS(MERS),
  METHODS(Moran),
  METHODS(S2I2R2),
  METHODS(SEIR),
  METHODS(SI2R),
  METHODS(SIIR),
  METHODS(SIR),
  METHODS(Strains),
  METHODS(TwoSpecies),
  METHODS(TwoUndead),
  {"parse_newick", (DL_FUNC) &parse_newick, 3},
  {"curtail", (DL_FUNC) &curtail, 3},
  {"yaml", (DL_FUNC) &yaml, 1},
  {"gendat", (DL_FUNC) &gendat, 2},
  {"geneal", (DL_FUNC) &geneal, 1},
  {"subsample", (DL_FUNC) &subsample, 2},
  {"geneal_scale", (DL_FUNC) &genealScaleShift, 3},
  {"cblv", (DL_FUNC) &cblv, 1},
  {"parse_cblv", (DL_FUNC) &parse_cblv, 3},
  {NULL, NULL, 0}
};
 
static const R_CallMethodDef extMethods[] = {
  {"getInfo", (DL_FUNC) &getInfo, -1},
  {"genealSum", (DL_FUNC) &genealSum, -1},
  {NULL, NULL, 0}
};
 
void R_init_phylopomp (DllInfo *info) {
  // Register routines
  R_registerRoutines(info,NULL,callMethods,NULL,extMethods);
  R_useDynamicSymbols(info,TRUE);
  // R_useDynamicSymbols(info,FALSE);
  // R_forceSymbols(info,TRUE);
  get_userdata = (get_userdata_t*) R_GetCCallable("pomp","get_userdata");
  get_userdata_double = (get_userdata_double_t*) R_GetCCallable("pomp","get_userdata_double");
  get_userdata_int = (get_userdata_int_t*) R_GetCCallable("pomp","get_userdata_int");
}