phylopomp
Phylodynamics for POMPs
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decls.h
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1/* src/init.c */
2extern void R_init_phylopomp(DllInfo *);
3/* src/bdei_pomp.c */
4extern void bdei_rinit(double *, const double *, double, const int *, const int *, const int *, const double *);
5extern void bdei_gill(double *, const double *, const int *, const int *, const int *, const double *, double, double);
6extern void bdei_dmeas(double *, const double *, const double *, const double *, int, const int *, const int *, const int *, const int *, const double *, double);
7/* src/bdss_pomp.c */
8extern void bdss_rinit(double *, const double *, double, const int *, const int *, const int *, const double *);
9extern void bdss_gill(double *, const double *, const int *, const int *, const int *, const double *, double, double);
10extern void bdss_dmeas(double *, const double *, const double *, const double *, int, const int *, const int *, const int *, const int *, const double *, double);
11/* src/lbdp_pomp.c */
12extern void lbdp_rinit(double *, const double *, double, const int *, const int *, const int *, const double *);
13extern void lbdp_gill(double *, const double *, const int *, const int *, const int *, const double *, double, double);
14extern void lbdp_dmeas(double *, const double *, const double *, const double *, int, const int *, const int *, const int *, const int *, const double *, double);
15/* src/seirs_pomp.c */
16extern void seirs_rinit(double *, const double *, double, const int *, const int *, const int *, const double *);
17extern void seirs_gill(double *, const double *, const int *, const int *, const int *, const double *, double, double);
18extern void seirs_dmeas(double *, const double *, const double *, const double *, int, const int *, const int *, const int *, const int *, const double *, double);
19/* src/si2r_pomp.c */
20extern void si2rs_rinit(double *, const double *, double, const int *, const int *, const int *, const double *);
21extern void si2rs_gill(double *, const double *, const int *, const int *, const int *, const double *, double, double);
22extern void si2rs_dmeas(double *, const double *, const double *, const double *, int, const int *, const int *, const int *, const int *, const double *, double);
23/* src/sirs_pomp.c */
24extern void sirs_rinit(double *, const double *, double, const int *, const int *, const int *, const double *);
25extern void sirs_gill(double *, const double *, const int *, const int *, const int *, const double *, double, double);
26extern void sirs_dmeas(double *, const double *, const double *, const double *, int, const int *, const int *, const int *, const int *, const double *, double);
27/* src/strains_pomp.c */
28extern void strains_rinit(double *, const double *, double, const int *, const int *, const int *, const double *);
29extern void strains_gill(double *, const double *, const int *, const int *, const int *, const double *, double, double);
30extern void strains_dmeas(double *, const double *, const double *, const double *, int, const int *, const int *, const int *, const int *, const double *, double);
31/* src/twospecies_pomp.c */
32extern void twospecies_rinit(double *, const double *, double, const int *, const int *, const int *, const double *);
33extern void twospecies_gill(double *, const double *, const int *, const int *, const int *, const double *, double, double);
34extern void twospecies_dmeas(double *, const double *, const double *, const double *, int, const int *, const int *, const int *, const int *, const double *, double);
sirs_gill
void sirs_gill(double *, const double *, const int *, const int *, const int *, const double *, double, double)
Definition sirs_pomp.c:92
lbdp_dmeas
void lbdp_dmeas(double *, const double *, const double *, const double *, int, const int *, const int *, const int *, const int *, const double *, double)
Measurement model likelihood (dmeasure).
Definition lbdp_pomp.c:169
strains_dmeas
void strains_dmeas(double *, const double *, const double *, const double *, int, const int *, const int *, const int *, const int *, const double *, double)
Measurement model likelihood (dmeasure).
Definition strains_pomp.c:291
sirs_rinit
void sirs_rinit(double *, const double *, double, const int *, const int *, const int *, const double *)
Latent-state initializer (rinit).
Definition sirs_pomp.c:70
si2rs_gill
void si2rs_gill(double *, const double *, const int *, const int *, const int *, const double *, double, double)
Definition si2r_pomp.c:184
twospecies_gill
void twospecies_gill(double *, const double *, const int *, const int *, const int *, const double *, double, double)
Definition twospecies_pomp.c:291
bdss_rinit
void bdss_rinit(double *, const double *, double, const int *, const int *, const int *, const double *)
Definition bdss_pomp.c:129
bdei_gill
void bdei_gill(double *, const double *, const int *, const int *, const int *, const double *, double, double)
Definition bdei_pomp.c:139
si2rs_dmeas
void si2rs_dmeas(double *, const double *, const double *, const double *, int, const int *, const int *, const int *, const int *, const double *, double)
Measurement model likelihood (dmeasure).
Definition si2r_pomp.c:404
seirs_dmeas
void seirs_dmeas(double *, const double *, const double *, const double *, int, const int *, const int *, const int *, const int *, const double *, double)
Measurement model likelihood (dmeasure).
Definition seirs_pomp.c:350
strains_gill
void strains_gill(double *, const double *, const int *, const int *, const int *, const double *, double, double)
Definition strains_pomp.c:137
sirs_dmeas
void sirs_dmeas(double *, const double *, const double *, const double *, int, const int *, const int *, const int *, const int *, const double *, double)
Measurement model likelihood (dmeasure).
Definition sirs_pomp.c:207
R_init_phylopomp
void R_init_phylopomp(DllInfo *)
Definition init.c:70
bdss_dmeas
void bdss_dmeas(double *, const double *, const double *, const double *, int, const int *, const int *, const int *, const int *, const double *, double)
Measurement model likelihood (dmeasure).
Definition bdss_pomp.c:393
bdei_rinit
void bdei_rinit(double *, const double *, double, const int *, const int *, const int *, const double *)
Definition bdei_pomp.c:107
lbdp_rinit
void lbdp_rinit(double *, const double *, double, const int *, const int *, const int *, const double *)
Latent-state initializer (rinit).
Definition lbdp_pomp.c:54
twospecies_rinit
void twospecies_rinit(double *, const double *, double, const int *, const int *, const int *, const double *)
Definition twospecies_pomp.c:250
si2rs_rinit
void si2rs_rinit(double *, const double *, double, const int *, const int *, const int *, const double *)
Definition si2r_pomp.c:159
seirs_gill
void seirs_gill(double *, const double *, const int *, const int *, const int *, const double *, double, double)
Definition seirs_pomp.c:143
strains_rinit
void strains_rinit(double *, const double *, double, const int *, const int *, const int *, const double *)
Latent-state initializer (rinit).
Definition strains_pomp.c:111
twospecies_dmeas
void twospecies_dmeas(double *, const double *, const double *, const double *, int, const int *, const int *, const int *, const int *, const double *, double)
Measurement model likelihood (dmeasure).
Definition twospecies_pomp.c:638
lbdp_gill
void lbdp_gill(double *, const double *, const int *, const int *, const int *, const double *, double, double)
Definition lbdp_pomp.c:74
bdei_dmeas
void bdei_dmeas(double *, const double *, const double *, const double *, int, const int *, const int *, const int *, const int *, const double *, double)
Measurement model likelihood (dmeasure).
Definition bdei_pomp.c:321
seirs_rinit
void seirs_rinit(double *, const double *, double, const int *, const int *, const int *, const double *)
Definition seirs_pomp.c:118
bdss_gill
void bdss_gill(double *, const double *, const int *, const int *, const int *, const double *, double, double)
Definition bdss_pomp.c:163