Aaron A. King on github

kinglab.eeb.lsa.umich.edu

R package repository at https://kingaa.github.io/

Statistics

21 public repos

  1. pomp

    114 watchers / 27 forks

    R package for statistical inference using partially observed Markov processes

    Updated Nov 20, 2024

    R

  2. phylopomp

    5 watchers / 0 forks

    R package for phylodynamics

    Updated Nov 15, 2024

    HTML

  3. kingaa.github.io

    6 watchers / 0 forks

    Aaron A. King

    Updated Nov 15, 2024

    HTML

  4. ouch

    15 watchers / 4 forks

    Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses

    Updated Nov 6, 2024

    R

  5. subplex

    10 watchers / 2 forks

    Subplex Optimization Algorithm

    Updated Nov 6, 2024

    Fortran

  6. circumstance

    1 watchers / 0 forks

    a helper package for pomp

    Updated Nov 6, 2024

    R

  7. aakmisc

    1 watchers / 0 forks

    Miscellany

    Updated Nov 6, 2024

    R

  8. tao

    1 watchers / 0 forks

    the Great Tao Package

    Updated Nov 6, 2024

    Makefile

  9. structured-genealogy-process-paper

    2 watchers / 0 forks

    Supporting code and data for King, Lin, & Ionides (2024) "Exact Phylodynamic Likelihood via Structured Markov Genealogy Processes"

    Updated Jun 12, 2024

    TeX

  10. malaria-rbc-dynamics

    2 watchers / 0 forks

    Supporting code and data for Frontiers MS "Red blood cell dynamics during malaria infection violate the assumptions of mathematical models of infection dynamics"

    Updated May 10, 2024

    R

  11. sbied

    25 watchers / 12 forks

    Simulation-based Inference for Epidemiological Dynamics

    Updated Apr 25, 2024

    HTML

  12. serrapilheira

    2 watchers / 1 forks

    Training Program in Quantitative Ecology

    Updated Mar 4, 2024

    HTML

  13. R_Tutorial

    14 watchers / 8 forks

    A Tutorial Introduction to R

    Updated Sep 6, 2023

    HTML

  14. mathematica-addons

    8 watchers / 5 forks

    Some useful Mathematica add-on packages

    Updated Apr 30, 2024

    Mathematica

  15. short-course

    5 watchers / 2 forks

    Model-based Inference in Ecology and Epidemiology

    Updated Nov 12, 2020

    HTML

  16. clim-dis

    2 watchers / 1 forks

    Materials for ICTP Workshop on Mathematical Models of Climate Variability, Environmental Change and Infectious Diseases

    Updated Apr 15, 2020

    HTML

  17. gravity

    1 watchers / 0 forks

    Supporting material for Bjørnstad, Viboud, Grenfell, King (2020) "Comparison of alternative models of human movement and the spread of disease"

    Updated Jun 28, 2022

    HTML

  18. genpomp

    1 watchers / 0 forks

    POMP models for genetic data

    Updated Apr 28, 2017

    C++

  19. measles_competing_risks

    0 watchers / 0 forks

    Modelling measles spatial spread with a competing-risks framework

    Updated Apr 28, 2020

  20. massachusetts-honeymoon

    0 watchers / 0 forks

    Supporting material for the paper "The impact of past vaccination coverage and immunity on pertussis resurgence", M. Domenech de Cellès, F. M. G. Magpantay, A. A. King, and P. Rohani, Science Translational Medicine 10(434): eaaj1748, 2018. https://doi.org/10.1126/scitranslmed.aaj1748

    Updated Mar 19, 2018

    C

  21. vissched

    0 watchers / 0 forks

    Visit-day Scheduler

    Updated Aug 17, 2017

    C