Aaron A. King on github

kinglab.eeb.lsa.umich.edu

R package repository at https://kingaa.github.io/

Statistics

22 public repos

  1. pomp

    118 watchers / 27 forks

    R package for statistical inference using partially observed Markov processes

    Updated Aug 1, 2025

    R

  2. kingaa.github.io

    6 watchers / 0 forks

    Aaron A. King

    Updated Aug 1, 2025

    HTML

  3. structured-genealogy-process-paper

    2 watchers / 0 forks

    Supporting code and data for King, Lin, & Ionides (2024) "Exact Phylodynamic Likelihood via Structured Markov Genealogy Processes"

    Updated Jul 15, 2025

    TeX

  4. PartiallyObservedMarkovProcesses.jl

    8 watchers / 1 forks

    pomp in Julia

    Updated Jan 3, 2025

    Julia

  5. ouch

    16 watchers / 4 forks

    Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses

    Updated May 27, 2025

    R

  6. phylopomp

    9 watchers / 0 forks

    R package for phylodynamics

    Updated Dec 2, 2024

    HTML

  7. sbied

    25 watchers / 13 forks

    Simulation-based Inference for Epidemiological Dynamics

    Updated May 8, 2025

    HTML

  8. malaria-rbc-dynamics

    3 watchers / 0 forks

    Supporting code and data for Frontiers MS "Red blood cell dynamics during malaria infection violate the assumptions of mathematical models of infection dynamics"

    Updated May 10, 2024

    R

  9. R_Tutorial

    16 watchers / 9 forks

    A Tutorial Introduction to R

    Updated Sep 6, 2023

    HTML

  10. serrapilheira

    2 watchers / 1 forks

    Training Program in Quantitative Ecology

    Updated Mar 4, 2024

    HTML

  11. mathematica-addons

    9 watchers / 5 forks

    Some useful Mathematica add-on packages

    Updated Apr 29, 2025

    Mathematica

  12. subplex

    10 watchers / 3 forks

    Subplex Optimization Algorithm

    Updated Apr 16, 2025

    Fortran

  13. short-course

    5 watchers / 2 forks

    Model-based Inference in Ecology and Epidemiology

    Updated Nov 12, 2020

    HTML

  14. clim-dis

    2 watchers / 1 forks

    Materials for ICTP Workshop on Mathematical Models of Climate Variability, Environmental Change and Infectious Diseases

    Updated Apr 15, 2020

    HTML

  15. gravity

    1 watchers / 0 forks

    Supporting material for Bjørnstad, Viboud, Grenfell, King (2020) "Comparison of alternative models of human movement and the spread of disease"

    Updated Jun 28, 2022

    HTML

  16. circumstance

    1 watchers / 0 forks

    a helper package for pomp

    Updated Apr 16, 2025

    R

  17. genpomp

    1 watchers / 0 forks

    POMP models for genetic data

    Updated Apr 28, 2017

    C++

  18. aakmisc

    1 watchers / 0 forks

    Miscellany

    Updated Nov 6, 2024

    R

  19. tao

    1 watchers / 0 forks

    the Great Tao Package

    Updated Nov 6, 2024

    Makefile

  20. measles_competing_risks

    0 watchers / 0 forks

    Modelling measles spatial spread with a competing-risks framework

    Updated Apr 28, 2020

  21. massachusetts-honeymoon

    0 watchers / 0 forks

    Supporting material for the paper "The impact of past vaccination coverage and immunity on pertussis resurgence", M. Domenech de Cellès, F. M. G. Magpantay, A. A. King, and P. Rohani, Science Translational Medicine 10(434): eaaj1748, 2018. https://doi.org/10.1126/scitranslmed.aaj1748

    Updated Mar 19, 2018

    C

  22. vissched

    0 watchers / 0 forks

    Visit-day Scheduler

    Updated Aug 17, 2017

    C