plot {pomp}  R Documentation 
pomp plotting facilities
Description
Diagnostic plots.
Usage
## S4 method for signature 'pomp_plottable'
plot(
x,
variables,
panel = lines,
nc = NULL,
yax.flip = FALSE,
mar = c(0, 5.1, 0, if (yax.flip) 5.1 else 2.1),
oma = c(6, 0, 5, 0),
axes = TRUE,
...
)
## S4 method for signature 'Pmcmc'
plot(x, ..., pars)
## S4 method for signature 'Abc'
plot(x, ..., pars, scatter = FALSE)
## S4 method for signature 'Mif2'
plot(x, ..., pars, transform = FALSE)
## S4 method for signature 'probed_pomp'
plot(x, y, ...)
## S4 method for signature 'spectd_pomp'
plot(
x,
...,
max.plots.per.page = 4,
plot.data = TRUE,
quantiles = c(0.025, 0.25, 0.5, 0.75, 0.975),
quantile.styles = list(lwd = 1, lty = 1, col = "gray70"),
data.styles = list(lwd = 2, lty = 2, col = "black")
)
## S4 method for signature 'bsmcd_pomp'
plot(x, pars, thin, ...)
## S4 method for signature 'probe_match_objfun'
plot(x, y, ...)
## S4 method for signature 'spect_match_objfun'
plot(x, y, ...)
Arguments
x 
the object to plot 
variables 
optional character; names of variables to be displayed 
panel 
function of the form 
nc 
the number of columns to use. Defaults to 1 for up to 4 series, otherwise to 2. 
yax.flip 
logical; if TRUE, the yaxis (ticks and numbering) should flip from side 2 (left) to 4 (right) from series to series. 
mar , oma 
the 
axes 
logical; indicates if x and y axes should be drawn 
... 
ignored or passed to lowlevel plotting functions 
pars 
names of parameters. 
scatter 
logical; if 
transform 
logical; should the parameter be transformed onto the estimation scale? 
y 
ignored 
max.plots.per.page 
positive integer; maximum number of plots on a page 
plot.data 
logical; should the data spectrum be included? 
quantiles 
numeric; quantiles to display 
quantile.styles 
list; plot styles to use for quantiles 
data.styles 
list; plot styles to use for data 
thin 
integer; when the number of samples is very large, it can be helpful to plot a random subsample:
