plot {pomp} | R Documentation |
pomp plotting facilities
Description
Diagnostic plots.
Usage
## S4 method for signature 'pomp_plottable'
plot(
x,
variables,
panel = lines,
nc = NULL,
yax.flip = FALSE,
mar = c(0, 5.1, 0, if (yax.flip) 5.1 else 2.1),
oma = c(6, 0, 5, 0),
axes = TRUE,
...
)
## S4 method for signature 'Pmcmc'
plot(x, ..., pars)
## S4 method for signature 'Abc'
plot(x, ..., pars, scatter = FALSE)
## S4 method for signature 'Mif2'
plot(x, ..., pars, transform = FALSE)
## S4 method for signature 'probed_pomp'
plot(x, y, ...)
## S4 method for signature 'spectd_pomp'
plot(
x,
...,
max.plots.per.page = 4,
plot.data = TRUE,
quantiles = c(0.025, 0.25, 0.5, 0.75, 0.975),
quantile.styles = list(lwd = 1, lty = 1, col = "gray70"),
data.styles = list(lwd = 2, lty = 2, col = "black")
)
## S4 method for signature 'bsmcd_pomp'
plot(x, pars, thin, ...)
## S4 method for signature 'probe_match_objfun'
plot(x, y, ...)
## S4 method for signature 'spect_match_objfun'
plot(x, y, ...)
Arguments
x |
the object to plot |
variables |
optional character; names of variables to be displayed |
panel |
function of the form |
nc |
the number of columns to use. Defaults to 1 for up to 4 series, otherwise to 2. |
yax.flip |
logical; if TRUE, the y-axis (ticks and numbering) should flip from side 2 (left) to 4 (right) from series to series. |
mar , oma |
the |
axes |
logical; indicates if x- and y- axes should be drawn |
... |
ignored or passed to low-level plotting functions |
pars |
names of parameters. |
scatter |
logical; if |
transform |
logical; should the parameter be transformed onto the estimation scale? |
y |
ignored |
max.plots.per.page |
positive integer; maximum number of plots on a page |
plot.data |
logical; should the data spectrum be included? |
quantiles |
numeric; quantiles to display |
quantile.styles |
list; plot styles to use for quantiles |
data.styles |
list; plot styles to use for data |
thin |
integer; when the number of samples is very large, it can be helpful to plot a random subsample:
|