Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses


Documentation for package ‘ouch’ version 2.17-1

Help Pages

ouch-package Ornstein-Uhlenbeck methods for comparative phylogenetic hypotheses
anolis.ssd Greater Antillean anolis lizard sexual size dimorphism data
ape2ouch Phylogenetic tree object in 'ouch' format
bimac Anolis bimaculatus lizard size data
bootstrap Bootstrapping for uncertainty quantification
bootstrap-method Bootstrapping for uncertainty quantification
brown Phylogenetic Brownian motion models
browntree-class Phylogenetic Brownian motion models
coef Model coefficients
coef-method Model coefficients
hansen Ornstein-Uhlenbeck models of trait evolution
hansentree-class Ornstein-Uhlenbeck models of trait evolution
logLik Log likelihood of a fitted model
logLik-method Log likelihood of a fitted model
ouch Ornstein-Uhlenbeck methods for comparative phylogenetic hypotheses
ouchtree Phylogenetic tree object in 'ouch' format
ouchtree-class Phylogenetic tree object in 'ouch' format
paint Painting regimes on a phylogenetic tree
plot 'ouch' plotting functions
plot-method 'ouch' plotting functions
simulate Simulations of a phylogenetic trait model
simulate-method Simulations of a phylogenetic trait model
summary 'ouch' summary methods
summary-method 'ouch' summary methods
update Update and refit an 'ouch' model
update-method Update and refit an 'ouch' model